Starbase cerna network

Author: ixku

August undefined, 2024

WebbIt is designed for decoding Pan-Cancer and Interaction Networks of lncRNAs, miRNAs, competing endogenous RNAs(ceRNAs), RNA-binding proteins (RBPs) and mRNAs from … http://starbase.sysu.edu.cn/starbase2/mrnaCeRNA.php

starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and …

WebbName Description type Link References StarBase: starBase is designed for decoding miRNA-lncRNA, miRNA-mRNA, miRNA-circRNA, miRNA-pseudogene, miRNA-sncRNA, protein-lncRNA, protein-sncRNA, protein-mRNA and protein-pseudogene interactions and ceRNA networks from 108 CLIP-Seq (HITS-CLIP, PAR-CLIP, iCLIP, CLASH) datasets. It … WebbceRNABase is designed for decoding Pan-Cancer ceRNA networks involving lncRNAs and mRNAs by analyzing 5599 tumor and normal samples and 108 CLIP-Seq (HITS-CLIP, … thinkro golf

2024年了，ceRNA网络构建也要有新意 - 知乎

Webb1 jan. 2014 · Moreover, starBase v2.0 has been updated to provide the most comprehensive CLIP-Seq experimentally supported miRNA-mRNA and miRNA-lncRNA … WebbceRNA Regulatory Networks. The user can browse the predicted competing endogenous RNA (ceRNA) pairs or regulatory networks by integrating the interactions from potential … Webb下面我们就来看一下本文是如何进行结果分析的： 1. 15个抗癌药物类别的ceRNA网络的全球概况和比较（1）ceRNA网络概况. 为了研究ceRNA triplets（lncRNAs-miRNAs-PCGs） … thinkroadmaster.com

circRNA-mediated ceRNA network in lung adenocarcinoma OTT

starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and …

Webb5 juli 2024 · The ceRNA network, especially three core sub networks, may be served as early biomarkers and potential targets for SSc, ... Starbase v2.0: decoding mirna-cerna, mirna-ncrna and protein-rna interaction networks from large-scale clip-seq data. Nucleic Acids Res. 42, D92–D97. doi: 10.1093/nar/gkt1248. PubMed Abstract CrossRef Full ... Webb13 okt. 2024 · The key DEGs, DEMs, and DELs worked together to construct the triple regulatory network, and identified key ceRNAs through their expression regulation. Target sites were predicted using StarBase. DEL sequences were retrieved from LNCipedia 6; the lncLocator database 7 was used to determine DEL cellular localizations. thinkrolls 2 apkWebbceRNABase is designed for decoding Pan-Cancer ceRNA networks involving lncRNAs and mRNAs by analyzing 5599 tumor and normal samples and 108 CLIP-Seq (HITS-CLIP, PAR-CLIP, iCLIP, CLASH) datasets. Competing endogenous RNA database: predicted ceRNA candidates from genome. ceRNAFunction is a web server to predict lncRNA and protein … thinkrolls

"WebbstarBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data. Although microRNAs (miRNAs), other non … " - Starbase cerna network

Starbase cerna network

Webb11 jan. 2024 · Starbase 是通过对高通量的 CLIP-Seq 实验数据和降解组实验数据来搜寻到 micorRNA 靶标，为探讨 microRNA 的靶标提供了各式各样的可视化界面，该数据库容括 … Webb19 dec. 2015 · CONCLUSIONS largeset RBPbinding sites derived from all available CLIP-Seq experimental tech- niques (PAR-CLIP, HITS-CLIP, iCLIP, CLASH), we have shown extensive complexRNA–RNA protein–RNAinteraction networks. Compared previousversion starBase(v1.0) otherdatabases, distinctivefeatures starBasev2.0 include starBasev2.0 …

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Webb18 sep. 2013 · starBase v2.0 also provides visualization, analysis, discovery and downloading of above-mentioned large-scale functional genomics data. miRNA-lncRNA … WebbRESTClient 使用教程. 使用 RESTClient前的准备工作 1.1 下载RESTClient JAR包： restclient.jar； 1.2 使用前安装Java 支持的Java版本 >=1.7 1.3 启动RESTClient 如果API需要登录认证，请先使用浏览器完成API登录认证成功后，将浏览器生成的JSESSIONID填写到Cookie中，这样就可以无需 ...

Webb1 dec. 2013 · A system-level overview of the starBase v2.0 core framework. A total of 108 data sets of CLIP-seq experiments were compiled to achieve various RBP target sites. … http://starbase.sysu.edu.cn/ceRNA.php?source=mRNA

WebbStarbase数据库于2011年上线，目前更新到3.0版本，开发者是中山大学RNA信息中心的屈良鹄研究团队。. Starbase是做lncRNA/circRNA/microRNA等研究常用的强大数据库，通 … WebbConstruction of a ceRNA Network “miRNA sponge” has been largely acknowledged as a potential mechanism of circRNA working. Thus, a ceRNA network was constructed as …

WebbFigure 1. A system-level overview of the starBase v2.0 core framework. A total of 108 data sets of CLIP-seq experiments were compiled to achieve various RBP target sites. …

WebbIn the ceRNA regulatory network, miRNA acts as a bridge, and mediates the occurrence of this regulatory mechanism by combining with various RNA molecules. The starBase … thinkrolls apkWebb对starbase数据库提供的数据列名的解释里，有两个比较重要的： clipExpNum ：The number of CLIP-seq experiments ; pancancerNum: Number of Cancer types (Pan … thinkrolls 2 appWebbHere, we presented the ceRNA networks from thousands of interactions of miRNA-targets supported by CLIP-seq data. The results could be examined by p-value and False Discovery Rate (FDR). Usage:... thinkrolls apk 2Webb8 maj 2024 · Colorectal cancer (CRC) is one of the leading causes of cancer-related deaths worldwide and is derived from an accumulation of genetic and epigenetic changes. This study explored potential prognostic markers in CRC via the construction and in-depth analysis of a competing endogenous RNA (ceRNA) network, which was generated … thinkrolls 2 freeWebb20 nov. 2024 · Circinteractome and StarBase databases were used to predict circRNA associated-miRNAs and mRNAs, respectively. Then, protein–protein interaction (PPI) … thinkrolls 3Webb11 aug. 2024 · Constructions of a ceRNA network for mesenchymal ovarian cancer. The iM subtype specific ceRNA network for OvCa contains 7 miRNAs, 14 lncRNAs and 12 EMT-related coding-genes (Fig. 1a).A total of 19 lncRNA-EMT gene pairs had a significantly higher number of common miRNAs than would be expected by chance (P < 0.05, … thinkrolls 2Webb10 feb. 2024 · Competing endogenous RNAs (ceRNAs) have gained attention in cancer research owing to their involvement in microRNA-mediated gene regulation. Previous … thinkrogers payment